PhD Research Project

Patrycja Kozik

Molecular mechanisms of pore formation by perforin-2

Patrycja Kozik

Perforin-2 (Mpeg1) is an ancient pore-forming protein of the membrane attack complex perforin/cholesterol-dependent cytolysin (MACPF/CDC) family with essential roles in immunity. Unlike perforin-1, which is secreted by cytotoxic T cells to kill diseased host cells, perforin-2 is expressed in dendritic cells and macrophages, where it is anchored in endosomal and phagosomal membranes. Intriguingly, perforin-2 is reported to perform two distinct functions during immune responses: attacking intravacuolar pathogens and forming pores in endocytic compartments to enable cytosolic delivery of antigens during cross-presentation. The aim of this project is to establish how these two functions are regulated on the molecular level, and whether they involve the formation of pores in two different orientations – away and towards the host membranes. This work will help to establish how one effector can carry out two fundamentally different functions during immune responses.

The project will employ state-of-the-art microscopy techniques (including confocal, live, multispectral, and/or high-resolution approaches) using established as well as novel reagents (e.g. organelle markers delivered by in vitro-transcribed mRNAs, and de novo-designed protein binders). The position is best suited for an enthusiastic student interested in how immune responses are initiated at the molecular level.

Relevant Reading

Anchoring of perforin-2 via the transmembrane domain is required for antigen escape into the cytosolLaub M, Chatterjee R, Kozik PThe EMBO Journal 45(19): 6759-6781 (2026)
Perforin-2 is a pore-forming effector of endocytic escape in cross-presenting dendritic cellsRodríguez-Silvestre P, Laub M, Krawczyk PA, Davies AK, Schessner JP, Parveen R, Tuck BJ, McEwan WA, Borner GHH, Kozik PScience 380(6651): 1258-1265 (2023)

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