PhD Research Project

Felix Randow

Exploring non-protein ubiquitylation, a new frontier in biology

Felix Randow

Ubiquitylation is essential for eukaryotic life. Until recently, proteins were the only substrates known to be modified with ubiquitin. Then we reported that the E3 ligase RNF213 ubiquitylates lipopolysaccharide (LPS) on bacteria that invade the host cytosol. LPS ubiquitylation marks bacteria for selective autophagy, thereby protecting the host from infection. Other non-protein substrates of ubiquitylation have since been identified, but the consequences of this modification remain largely unknown.

We recently discovered that mice lacking RNF213 accumulate insoluble glycogen (polyglucosan bodies) in specific brain regions, a pathology reminiscent of human Lafora disease. RNF213 selectively ubiquitylates poorly branched glycogen, triggering its removal by selective autophagy and thereby preventing polyglucosan accumulation. Non-protein ubiquitylation is a nascent field with clear importance in immune defense against pathogens, biomolecular quality control and likely many other cellular activities. Students interested in investigating the molecular mechanism and physiological consequences of non-protein ubiquitylation are invited to apply.

Relevant Reading

Quality control of glycogen through direct ubiquitylation by RNF213.Yip MCJ, Naydenova K, Otten EG, Heatley A, Moe A, Anton L, de Los Reyes-Ramírez L, Jolin HE, Langevin F, Wiacek M, Franco C, Bertolotti A, Kukulski W, McKenzie ANJ, Randow FNature: (2026)
Shigella flexneri evades LPS ubiquitylation through IpaH1.4-mediated degradation of RNF213.Naydenova K, Boyle KB, Pathe C, Pothukuchi P, Crespillo-Casado A, Scharte F, Hammoudi PM, Otten EG, Alto NM, Randow FNat Struct Mol Biol 32(9): 1741-1751 (2025)
Recognition of phylogenetically diverse pathogens through enzymatically amplified recruitment of RNF213.Crespillo-Casado A, Pothukuchi P, Naydenova K, Yip MCJ, Young JM, Boulanger J, Dharamdasani V, Harper C, Hammoudi PM, Otten EG, Boyle K, Gogoi M, Malik HS, Randow FEMBO Rep 25(11): 4979-5005 (2024)
Ubiquitylation of lipopolysaccharide by RNF213 during bacterial infection.Otten EG, Werner E, Crespillo-Casado A, Boyle KB, Dharamdasani V, Pathe C, Santhanam B, Randow FNature 594(7861): 111-116 (2021)

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